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| First Round Draft Pick History |
| 1 | 10 | 10 | 1998 | Annual Draft | P | Brett | Tomko | MLB |
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| 1 | 8 | 8 | 1997 | Annual Draft | OF | Brett | Butler | MLB |
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| 1 | 15 | 15 | 1996 | Annual Draft | P | Jose | Bautista | MLB |
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| Complete Draft History |
| 1 | 10 | 10 | 1998 | Annual Draft | P | Brett | Tomko | MLB |
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| 2 | 7 | 23 | 1998 | Annual Draft | 1B+ | Darin | Erstad | MLB |
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| 3 | 10 | 42 | 1998 | Annual Draft | OF | Butch | Huskey | MLB |
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| 4 | 7 | 55 | 1998 | Annual Draft | P | Mike | Fetters | MLB |
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| 5 | 10 | 74 | 1998 | Annual Draft | P | Dave | Mlicki | MLB |
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| 6 | 7 | 87 | 1998 | Annual Draft | P | Jason | Schmidt | MLB |
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| 7 | 10 | 106 | 1998 | Annual Draft | 1B+ | Lee | Stevens | MLB |
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| 8 | 7 | 119 | 1998 | Annual Draft | P | Darren | Oliver | MLB |
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| 9 | 10 | 138 | 1998 | Annual Draft | OF | Troy | O'Leary | MLB |
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| 10 | 7 | 151 | 1998 | Annual Draft | 2B | Craig | Counsell | MLB |
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| 11 | 10 | 170 | 1998 | Annual Draft | P | Mike | Cather | MLB |
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| 12 | 7 | 183 | 1998 | Annual Draft | P | Rigo | Beltran | MLB |
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| 13 | 10 | 202 | 1998 | Annual Draft | P | Marc | Wilkins | MLB |
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| 14 | 7 | 215 | 1998 | Annual Draft | C | Brian | Johnson | MLB |
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| 15 | 10 | 234 | 1998 | Annual Draft | P | Terry | Adams | MLB |
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| 16 | 7 | 247 | 1998 | Annual Draft | OF | Quinton | McCracken | MLB |
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| 17 | 10 | 266 | 1998 | Annual Draft | SS | Alex S. | Gonzalez | MLB |
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| 18 | 7 | 279 | 1998 | Annual Draft | P | Anthony | Telford | MLB |
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| 19 | 10 | 298 | 1998 | Annual Draft | P | Julian | Tavarez | MLB |
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| 20 | 7 | 311 | 1998 | Annual Draft | 2B | Mark | Lewis | MLB |
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| 1 | 8 | 8 | 1997 | Annual Draft | OF | Brett | Butler | MLB |
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| 2 | 9 | 25 | 1997 | Annual Draft | P | Rich | Loiselle | MLB |
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| 4 | 9 | 57 | 1997 | Annual Draft | 3B | Bill | Mueller | MLB |
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| 5 | 8 | 72 | 1997 | Annual Draft | 2B+ | Wilton | Guerrero | MLB |
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| 6 | 9 | 89 | 1997 | Annual Draft | P | John | Wasdin | MLB |
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| 7 | 8 | 104 | 1997 | Annual Draft | P | Steve | Karsay | MLB |
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| 1 | 15 | 15 | 1996 | Annual Draft | P | Jose | Bautista | MLB |
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| 3 | 5 | 37 | 1996 | Annual Draft | OF | Todd | Hollandsworth | MLB |
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| 4 | 6 | 54 | 1996 | Annual Draft | P | Ugueth | Urbina | MLB |
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| 4 | 10 | 58 | 1996 | Annual Draft | P | Rocky | Coppinger | MLB |
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| 5 | 5 | 69 | 1996 | Annual Draft | P | Bruce | Ruffin | MLB |
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| 5 | 8 | 72 | 1996 | Annual Draft | P | Bill | Taylor | MLB |
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| 6 | 6 | 86 | 1996 | Annual Draft | P | Blas | Minor | MLB |
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| 7 | 8 | 104 | 1996 | Annual Draft | P | Carlos | Reyes | MLB |
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| 8 | 6 | 118 | 1996 | Annual Draft | P | Omar | Daal | MLB |
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| 9 | 8 | 136 | 1996 | Annual Draft | 2B+ | Mark | Loretta | MLB |
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| 10 | 6 | 150 | 1996 | Annual Draft | P | Doug | Linton | MLB |
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