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| First Round Draft Pick History |
| 1 | 5 | 5 | 1999 | Annual Draft | P | Dwight | Gooden | MLB |
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| 1 | 3 | 3 | 1998 | Annual Draft | P | Dennis | Eckersley | MLB |
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| 1 | 10 | 10 | 1997 | Annual Draft | P | Fernando | Valenzuela | MLB |
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| 1 | 1 | 1 | 1996 | Annual Draft | SS | Alan | Trammell | MLB |
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| 1 | 11 | 11 | 1996 | Annual Draft | P | Zane | Smith | MLB |
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| Complete Draft History |
| 1 | 5 | 5 | 1999 | Annual Draft | P | Dwight | Gooden | MLB |
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| 2 | 8 | 20 | 1999 | Annual Draft | P | Mike | Morgan | MLB |
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| 3 | 5 | 29 | 1999 | Annual Draft | 3B | Gary | Gaetti | MLB |
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| 4 | 8 | 44 | 1999 | Annual Draft | 1B | Wally | Joyner | MLB |
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| 5 | 5 | 53 | 1999 | Annual Draft | | SKIPPED | PICK | MLB |
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| 6 | 8 | 68 | 1999 | Annual Draft | P | Jon | Lieber | MLB |
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| 7 | 5 | 77 | 1999 | Annual Draft | | SKIPPED | PICK | MLB |
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| 8 | 8 | 92 | 1999 | Annual Draft | OF | Ron | Gant | MLB |
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| 9 | 5 | 101 | 1999 | Annual Draft | P | John | Halama | MLB |
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| 10 | 8 | 116 | 1999 | Annual Draft | P | Sterling | Hitchcock | MLB |
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| 11 | 5 | 125 | 1999 | Annual Draft | C | Tony | Eusebio | MLB |
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| 12 | 8 | 140 | 1999 | Annual Draft | SS | Orlando | Cabrera | MLB |
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| 1 | 3 | 3 | 1998 | Annual Draft | P | Dennis | Eckersley | MLB |
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| 2 | 3 | 19 | 1998 | Annual Draft | P | Mark | Portugal | MLB |
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| 3 | 3 | 35 | 1998 | Annual Draft | P | Jeff | Nelson | MLB |
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| 4 | 3 | 51 | 1998 | Annual Draft | SS | Ozzie | Guillen | MLB |
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| 5 | 3 | 67 | 1998 | Annual Draft | C | Lenny | Webster | MLB |
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| 6 | 3 | 83 | 1998 | Annual Draft | 2B | Shawon | Dunston | MLB |
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| 7 | 3 | 99 | 1998 | Annual Draft | P | Tony | Fossas | MLB |
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| 1 | 10 | 10 | 1997 | Annual Draft | P | Fernando | Valenzuela | MLB |
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| 2 | 16 | 32 | 1997 | Annual Draft | P | Danny | Jackson | MLB |
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| 3 | 1 | 33 | 1997 | Annual Draft | P | Kevin | Gross | MLB |
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| 4 | 13 | 61 | 1997 | Annual Draft | C+ | Tony | Pena | MLB |
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| 4 | 16 | 64 | 1997 | Annual Draft | OF | Ruben | Sierra | MLB |
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| 5 | 1 | 65 | 1997 | Annual Draft | | SKIPPED | PICK | MLB |
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| 1 | 1 | 1 | 1996 | Annual Draft | SS | Alan | Trammell | MLB |
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| 1 | 11 | 11 | 1996 | Annual Draft | P | Zane | Smith | MLB |
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| 2 | 13 | 29 | 1996 | Annual Draft | P | Kevin | Gross | MLB |
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| 2 | 15 | 31 | 1996 | Annual Draft | P | Roger | McDowell | MLB |
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| 3 | 1 | 33 | 1996 | Annual Draft | P | Mike | Henneman | MLB |
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| 4 | 15 | 63 | 1996 | Annual Draft | P | Sterling | Hitchcock | MLB |
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| 5 | 1 | 65 | 1996 | Annual Draft | P | Frank | Rodriguez | MLB |
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